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Staining: Making the Invisible Visible
The mounting rung ended on an awkward fact: a good mountant matches the refractive index of the tissue, and in doing so makes an unstained specimen almost invisible. You have removed the glare and the detail with it.
The fix arrived from an unexpected direction. The coal-tar dye industry of the 1860s and 70s — the same chemistry as the synthetic alizarin and Para red blueprints — produced hundreds of brilliant aniline dyes for textiles, and biologists discovered that they stained some cell structures and not others. Paul Ehrlich built a career on which dye went where, and in 1884 Hans Christian Gram found a sequence that split all bacteria into two groups by the structure of their cell walls.
A stain is not paint. It binds where the chemistry lets it bind, so WHERE it lands is itself the information.
中级
4 hours
说明
1
1
Start with one dye and understand why it binds
Start with one dye and understand why it binds
Make a dilute methylene blue solution and put a drop on a scraping of onion or a smear of yeast. Within a minute the nuclei are blue and the rest is pale.
Methylene blue is a cation — a positively charged dye — and it is drawn to anything negatively charged. Nucleic acids are strongly negative, so the nucleus takes it up first and hardest. That is the whole logic of staining: match the charge or the chemistry of the dye to the structure you want, and the specimen sorts itself out.
此步骤所需材料：
亚甲蓝10 毫升
洋葱1 个
面包酵母10 克
载玻片及盖玻片20 个所需工具：
带刻度移液管（莫尔式）
显微镜2
2
Fix the smear before you stain it
Fix the smear before you stain it
Spread a thin smear, let it air-dry completely, then pass the slide briefly through a flame two or three times — warm, never hot.
Heat fixing does two things: it kills and sticks the material to the glass so it does not wash off during the staining steps, and it makes the cell membranes permeable so dye can get in. Overheat it and cells distort beyond recognition. The test is the back of your hand: the slide should feel warm, not painful.
所需工具：
载玻片及盖玻片3
3
Run a Gram stain, in order, with the clock
Run a Gram stain, in order, with the clock
Crystal violet for one minute; rinse. Iodine for one minute; rinse. Then the decolouriser — alcohol — for a few SECONDS only; rinse at once. Finally safranin for a minute; rinse and blot dry.
The iodine is not a stain, it is a mordant: it forms a large complex with the crystal violet that is trapped inside a thick cell wall. The decolourising step is the entire test and it is the one that goes wrong — a few seconds too long and everything washes out and reads as Gram-negative. Time it. Do not guess.
此步骤所需材料：
结晶紫染液50 毫升
碘晶体5 克
沙黄染液50 毫升
乙醇——实验级，95 %100 毫升所需工具：
秒表
丁腈手套
硼硅玻璃烧杯4
4
Read the result, and know what it means
Read the result, and know what it means
Purple cells are Gram-positive; pink or red cells are Gram-negative.
The difference is real structure, not a dye preference. A Gram-positive wall is a thick peptidoglycan mesh that holds the violet-iodine complex when the alcohol dehydrates and closes it. A Gram-negative wall is thin with an outer lipid membrane the alcohol dissolves, so the complex washes straight out and the safranin that follows is all you see. One minute of dye tells you something structural about an organism a thousand times too small to dissect.
所需工具：
显微镜5
5
Always run a known control alongside
Always run a known control alongside
Stain a slide of something you KNOW is Gram-positive on the same slide or alongside, in the same staining run.
Without it an all-pink result is ambiguous: either the organisms are Gram-negative, or you over-decolourised everything. The control answers that immediately, and it costs one extra smear. This is the same discipline as the dark control in the SODIS blueprint and the co-spot in the chromatography one — a result without a reference is a colour, not a finding.
此步骤所需材料：
载玻片及盖玻片10 个所需工具：
显微镜6
6
Counterstain, and use the whole palette
Counterstain, and use the whole palette
Try a two-dye scheme on plant sections: a dye that takes to lignified walls and a contrasting one for the cellulose, applied in sequence.
This is what haematoxylin and eosin do for animal tissue — one basic dye for the acidic nuclei, one acidic dye for the basic cytoplasm — and it is why almost every histology image you have ever seen is blue and pink. Two dyes that bind by opposite chemistry divide the specimen between them and nothing is left uncoloured.
此步骤所需材料：
沙黄染液50 毫升亚甲蓝20 毫升所需工具：
硼硅玻璃烧杯秒表7
7
Dye uptake, time and the decolourising window
Dye uptake, time and the decolourising window
正在加载 Jupyter 笔记本…
所需工具：
秒表8
8
Treat the dyes with respect
Treat the dyes with respect
Wear gloves, work over a tray, and keep the dyes off skin and clothing. Label every bottle with what it is and when you made it.
Aniline dyes stain hands for days and fabric permanently, and several of the historic ones are now known to be harmful in ways their Victorian users had no idea about — which is worth remembering as a general lesson about materials, not only these. Made-up stains also go off: crystal violet precipitates and methylene blue oxidises, and an old stain that no longer works looks exactly like a technique failure.
所需工具：
丁腈手套材料
8- 20 毫升占位符
- 1 个占位符
- 10 克占位符
- 20 个占位符
- 50 毫升占位符
- 5 克占位符
- 100 毫升占位符
- 100 毫升占位符
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